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Creators/Authors contains: "Chen, Shi-Jie"

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Modeling the reactive oxygen species (ROS) wave in Chlamydomonas reinhardtii colonies

https://doi.org/10.1016/j.freeradbiomed.2024.06.003

Zhou, Yuanzhe; Fichman, Yosef; Zhang, Sicheng; Mittler, Ron; Chen, Shi-Jie (September 2024, Free Radical Biology and Medicine)

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Propagation of a rapid cell-to-cell H2O2 signal over long distances in a monolayer of cardiomyocyte cells

https://doi.org/10.1016/j.redox.2024.103069

Fichman, Yosef; Rowland, Linda; Nguyen, Thi Thao; Chen, Shi-Jie; Mittler, Ron (April 2024, Redox Biology)

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RNA-Puzzles Round V: blind predictions of 23 RNA structures

https://doi.org/10.1038/s41592-024-02543-9

Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W; Antczak, Maciej; de_Aquino, Belisa_Rebeca H; Badepally, Nagendar Goud; Batey, Robert T; Baulin, Eugene F; Boinski, Pawel; Boniecki, Michal J; et al (December 2024, Nature Methods)

Free, publicly-accessible full text available December 2, 2025
Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions

https://doi.org/10.1016/j.csbj.2022.11.007

Rolband, Lewis; Beasock, Damian; Wang, Yang; Shu, Yao-Gen; Dinman, Jonathan D.; Schlick, Tamar; Zhou, Yaoqi; Kieft, Jeffrey S.; Chen, Shi-Jie; Bussi, Giovanni; et al (January 2022, Computational and Structural Biotechnology Journal)

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Regulatory context drives conservation of glycine riboswitch aptamers

https://doi.org/10.1371/journal.pcbi.1007564

Crum, Matt; Ram-Mohan, Nikhil; Meyer, Michelle M.; Chen, Shi-Jie (December 2019, PLOS Computational Biology)

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Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study

https://doi.org/10.1371/journal.pcbi.1006642

Bochicchio, Anna; Krepl, Miroslav; Yang, Fan; Varani, Gabriele; Sponer, Jiri; Carloni, Paolo; Chen, Shi-Jie (December 2018, PLOS Computational Biology)

Full Text Available
Cracking the Code: Enhancing Molecular Tools for Progress in Nanobiotechnology

https://doi.org/10.1021/acsabm.4c00432

Avila, Yelixza_I; Rebolledo, Laura_P; Skelly, Elizabeth; de_Freitas_Saito, Renata; Wei, Hui; Lilley, David; Stanley, Robin_E; Hou, Ya-Ming; Yang, Haoyun; Sztuba-Solinska, Joanna; et al (June 2024, ACS Applied Bio Materials)